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a4Core DNAcopy lapmix qcmetrics
a4Preproc drawProteins LBE qpcrNorm
ABarray DriverNet LEA QSutils
abseqR DTA LedPred quantsmooth
ABSSeq dualKS les QuartPAC
acde DupChecker levi QuaternaryProd
aCGH dupRadar lfa qusage
ACME dyebias limma qvalue
ADaCGH2 DynDoc limmaGUI R4RNA
affxparser EBarrays Linnorm rain
affy EBcoexpress LMGene rama
affycomp EBImage logicFS RandomWalkRestartMH
AffyCompatible EBSEA logitT randPack
AffyExpress EBSeq Logolas RankProd
affyILM EBSeqHMM lol RbcBook1
affyio ecolitk LPE RBGL
affylmGUI edge LPEadj RBioinf
affyPara edgeR lpNet rBiopaxParser
affypdnn eisa lpsymphony RBM
affyPLM ELBOW LRBaseDbi Rbowtie
affyQCReport EMDomics LVSmiRNA Rbowtie2
AffyRNADegradation EmpiricalBrownsMethod M3C rbsurv
AGDEX ENCODExplorer M3Drop RCASPAR
agilp EnhancedVolcano maanova RchyOptimyx
AIMS ENVISIONQuery macat RCM
alevinQC EpiDISH maCorrPlot RCyjs
alsace epiNEM made4 rDGIdb
altcdfenvs epivizrServer maftools Rdisop
AMOUNTAIN erccdashboard maigesPack RDRToolbox
AnalysisPageServer esetVis makecdfenv ReadqPCR
ANF ExiMiR MANOR reb
annotate ExperimentHub manta REBET
AnnotationDbi explorase MantelCorr RedeR
AnnotationForge fabia mapscape RefNet
AnnotationFuncs factDesign marray RefPlus
AnnotationHub FamAgg martini RGalaxy
annotationTools farms maSigPro Rgin
anota fCI maskBAD Rgraphviz
antiProfiles fdrame MassArray RGSEA
aroma_light FELLA massiR rhdf5
ArrayExpress FGNet MassSpecWavelet rhdf5client
arrayQuality fgsea matchBox Rhdf5lib
ArrayTools FindMyFriends matter rHVDM
ArrayTV FISHalyseR MaxContrastProjection RImmPort
ASAFE FitHiC MBAmethyl Ringo
ASEB flowAI MBCB RIVER
ASGSCA flowBeads MBttest Rmagpie
ASSET flowBin mdp rMAT
ASSIGN flowcatchR mdqc rmelting
BAC flowCHIC MeasurementError_cor RNAdecay
bacon flowCL MEDME RNAinteract
BADER flowClean MEIGOR rnaseqcomp
BaseSpaceR flowClust MergeMaid RNASeqPower
BayesKnockdown flowCore Mergeomics Rnits
BayesPeak flowCyBar MeSHDbi ROC
BCRANK flowFit messina Roleswitch
bcSeq flowFP metaArray rols
beachmat flowMap metabomxtr ROntoTools
beadarraySNP flowMatch metaCCA ropls
BeadDataPackR flowMeans MetaCyto ROTS
BEclear flowMerge metagenomeFeatures RPA
bgafun flowPeaks metagenomeSeq RProtoBufLib
BGmix flowPloidy metahdep RpsiXML
bgx flowPlots metaSeq rpx
BHC flowQB MetCirc rqubic
BicARE FlowRepositoryR MethPed rRDP
bigmemoryExtras FlowSOM methVisual RRHO
bigPint flowTime MethylMix RSeqAn
Biobase flowTrans methylMnM Rsubread
biobroom flowType mfa RTCA
BiocCaseStudies flowUtils Mfuzz RTCGA
BiocCheck flowViz MGFM RTopper
BiocFileCache focalCall MGFR Rtreemix
BiocGenerics FRGEpistasis mgsa rTRM
biocGraph frma MiChip RVS
BiocNeighbors frmaTools microbiome rWikiPathways
BioCor gaga microRNA S4Vectors
BiocParallel gage mimager safe
BiocPkgTools gaggle MIMOSA sagenhaft
BiocSingular gaia minet SAGx
BiocStyle GAprediction MiPP sampleClassifier
BiocVersion garfield MiRaGE SamSPECTRAL
biocViews GateFinder miRBaseConverter sangerseqR
bioDist gcatest miRNApath SANTA
biomaRt gCMAP miRNAtap savR
biomformat gCMAPWeb Mirsynergy SBMLR
BioMM gcrma mixOmics SCAN_UPC
BioMVCClass gdsfmt MLP SCBN
BioNet GEM MmPalateMiRNA scFeatureFilter
BioQC genArise mnem Sconify
BioSeqClass GeneAccord mogsa scRecover
biosigner GeneAnswers MoPS scsR
Biostrings geneClassifiers motifcounter SELEX
biosvd genefilter MPFE semisup
BiRewire genefu msa SEPIRA
birta GeneGA MSGFgui seqcombo
BRAIN GeneMeta MSGFplus SeqGSEA
brainImageR GeneNetworkBuilder msPurity seqLogo
BrainStars GeneOverlap MSstats seqTools
bridge geneplast MSstatsTMT sevenbridges
BridgeDbR geneplotter Mulcom SIAMCAT
BrowserViz geneRecommender multiClust sigaR
BufferedMatrix GeneRegionScan MultiMed siggenes
BufferedMatrixMethods GeneSelectMMD multiMiR sights
BUS geNetClassifier multiscan signet
CALIB GeneticsDesign multtest sigPathway
cancerclass GeneticsPed muscle sigsquared
CancerInSilico GENIE3 MVCClass SIM
CancerMutationAnalysis genoCN mzID SIMAT
CancerSubtypes GenomeGraphs mzR SimBindProfiles
CAnD genomes NanoStringDiff SIMD
caOmicsV Genominator NBSplice similaRpeak
Cardinal GenRank ncdfFlow SIMLR
Category GEOmetadb ndexr simpleaffy
CausalR GEOquery NeighborNet sincell
cbaf GEOsubmission nem SISPA
CCPROMISE gep2pep netbiov sitePath
ccrepe gespeR netprioR sizepower
cellGrowth GEWIST netReg SLqPCR
cellHTS2 ggtree netresponse SMAD
CellMapper GIGSEA NetSAM SMAP
CellNOptR GISPA networkBMA snapCGH
cellscape GLAD nnNorm snm
CellScore GladiaTOX NOISeq SNPediaR
CFAssay Glimma nondetects SNPRelate
CGEN GlobalAncova normalize450K snpStats
CGHbase globalSeq NormqPCR SpacePAC
CGHcall globaltest npGSEA sparseDOSSA
cghMCR GOexpress NTW specL
CGHnormaliter GOsummaries nucleoSim SpeCond
CGHregions gpls nuCpos SPEM
ChemmineOB gprege NuPoP SPIA
Chicago graper occugene spikeLI
chopsticks graph OCplus spkTools
CHRONOS GraphAlignment odseq splicegear
cisPath GraphAT OGSA splots
cleaver graphite oligo SPONGE
clippda GraphPAC OLIN spotSegmentation
Clomial GRENITS OLINgui SQUADD
Clonality GRridge omicade4 SRAdb
clonotypeR GSALightning OmicsMarkeR sRAP
clst GSAR Onassis SRGnet
clstutils GSCA OncoScore sscore
clustComp GSEABase OncoSimulR sscu
ClusterJudge GSEAlm onlineFDR sSeq
ClusterSignificance GSRI ontoProc ssize
clusterStab GSVA oppar SSPA
CMA GWASTools OPWeight ssrch
CNAnorm hapFabia OrderedList staRank
CNORdt Harman OSAT Starr
CNORfeeder Harshlight Oscope STATegRa
CNORfuzzy HCABrowser OutlierD statTarget
CNORode HDF5Array paircompviz stepNorm
CNTools HDTD pandaR Streamer
CNVtools Heatplus panp STRINGdb
cn_farms HELP PANR STROMA4
codelink HEM parglms Structstrings
cogena HIBAG parody SubCellBarCode
coGPS hicrep Path2PPI subSeq
COMPASS hierGWAS pathifier supraHex
compcodeR hierinf PathNet survcomp
condcomp HilbertVis pathprint Sushi
CONFESS HilbertVisGUI pathVar sva
consensus HIREewas pathwayPCA SWATH2stats
consensusOV hmdbQuery paxtoolsr SwathXtend
convert HMMcopy pcaGoPromoter swfdr
copa hopach PCAN SwimR
coRdon HPAanalyze PCAtools switchBox
CoRegFlux hpar pcot2 synergyfinder
CoRegNet HTqPCR pdInfoBuilder synlet
Cormotif HTSanalyzeR PECA SynMut
CorMut HybridMTest PepsNMR TargetScore
CORREP hypeR pepXMLTab TargetSearch
COSNet hyperdraw perturbatr TDARACNE
CountClust hypergraph pgca ternarynet
covEB iASeq PharmacoGx TFutils
covRNA iBBiG PhenStat tigre
cqn iCARE philr tilingArray
CRImage Icens phosphonormalizer timecourse
CSSP iChip phyloseq timescape
ctc iClusterPlus piano tkWidgets
CTDquerier iCOBRA pickgene TMixClust
cTRAP idiogram pint topconfects
ctsGE IdMappingAnalysis pkgDepTools TPP2D
cycle IdMappingRetrieval plethy treeio
CytoDx iGC plgem triform
cytofast IHW plier trigger
cytolib illuminaio plotGrouper trio
daMA imageHTS PLPE TRONCO
DART IMMAN plrs TSCAN
DBChIP immunoClust plw tspair
dcanr IMPCdata pmm TSSi
dcGSA ImpulseDE pogos TurboNorm
ddCt impute polyester tweeDEseq
DECIPHER INDEED Polyfit twilight
decontam INPower POST twoddpcr
DEDS interactiveDisplay powerTCR tximport
DEGseq interactiveDisplayBase prada TypeInfo
DelayedArray IntramiRExploreR PREDA UNDO
DelayedDataFrame inveRsion predictionet unifiedWMWqPCR
DelayedMatrixStats iPAC preprocessCore UniProt_ws
deltaGseg IPPD Prize universalmotif
DeMAND IRanges PROcess variancePartition
DepecheR iSeq procoil vbmp
DEqMS isobar profileScoreDist Vega
derfinderHelper IsoCorrectoR progeny VennDetail
DESeq IsoCorrectoRGUI PROMISE viper
DEsingle IsoGeneGUI PROPER vsn
dexus ISoLDE PROPS weaver
DFP iterativeBMA proteinProfiles widgetTools
diffGeneAnalysis iterativeBMAsurv ProteoMM Wrench
DiffLogo iterClust ProtGenerics XDE
diggit joda PSEA XINA
Director KCsmart PSICQUIC xmapbridge
DirichletMultinomial kebabs puma xps
discordant KEGGgraph pvac XVector
dks KEGGREST pvca yaqcaffy
DNABarcodeCompatibility kimod PWMEnrich zlibbioc
DNABarcodes KinSwingR qckitfastq